Insertion junction: CLIP2.054007_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.054007
Chromosome:chromosome 11
Location:529940
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre11.g467597 (1 of 1) IPR000104//IPR003439//IPR003593//IPR013525//IPR013581//IPR027417 - Antifreeze protein, type I // ABC transporter-like // AAA+ ATPase domain // ABC-2 type transporter // Plant PDR ABC transporter associated // P-loop containing nucleoside triphosphate hydrolase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCTTGGCGGAGGGGAGGCGTGCCAACGTGTGCTGCCACGGGTGGGGCTGT
Internal bar code:GTGTGGTCGATTACTACTTTAT

Confirmation - LEAP-Seq

LEAP-Seq distance:2434
LEAP-Seq percent confirming:83.3333
LEAP-Seq n confirming:10
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:12

Suggested primers for confirmation by PCR

Suggested primer 1:GCAAAACCCCTCGTCCAAAC
Suggested primer 2:GGTTGCTATGCAGGGAAGGT