Insertion junction: CLIP2.054012_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.054012
Chromosome:plastome
Location:163223
Confidence (%):40
Locus systematic id Locus common name Defline Feature
CreCp.g802324 tic214,orf1995,ycf1,2717035,ChreCp059 Forms with TIC20, TIC56 and TIC100 the 1-MD complex mediating chlorolast protein import CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATGGCAAACTTTTTTTGCCAAAAAATTACGTAAAAAAATATCATCAAAAG
Internal bar code:GTGCGTCCTTAAGGGTTTGCAC

Confirmation - LEAP-Seq

LEAP-Seq distance:226
LEAP-Seq percent confirming:66.6667
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:3

Suggested primers for confirmation by PCR

Suggested primer 1:CTTAAACCAGCATCACGGCG
Suggested primer 2:CAATGGTGGCGTACAAAGCA