Insertion junction: CLIP2.054095_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.054095
Chromosome:chromosome 3
Location:4664444
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g177100 (1 of 10) PTHR31867:SF1 - EXPANSIN-A1-RELATED intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCCGGGGTTTCATCGCGGGAGCTTTGGGCAGTGGGATGCTGTGTACGTAT
Internal bar code:GGCGATCCTGCTTCGGCTACTT

Confirmation - LEAP-Seq

LEAP-Seq distance:2676
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:42
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:42

Suggested primers for confirmation by PCR

Suggested primer 1:GTCGGAGGAGTTGGAGTTGG
Suggested primer 2:CTTCTCGGTCTCTCTCGCAC