Insertion junction: CLIP2.054102_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.054102
Chromosome:chromosome 16
Location:2691570
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g661700 (1 of 1) PTHR31775//PTHR31775:SF2 - FAMILY NOT NAMED // REMORIN intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACGAGGTGGTTGCGCACGGGCTCCTTGTTGATCCTCCTCTGCAGCTCCGC
Internal bar code:TTGACAAGGTGAACCATACGGT

Confirmation - LEAP-Seq

LEAP-Seq distance:1829
LEAP-Seq percent confirming:98.0
LEAP-Seq n confirming:49
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:50

Suggested primers for confirmation by PCR

Suggested primer 1:ACACGTCTACATGTGCTGCA
Suggested primer 2:CACGACAAGCCCCTTTGTTG