Insertion junction: CLIP2.054205_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.054205
Chromosome:chromosome 13
Location:2841532
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g583050 Tic55-like5,TIC55-5,PAO8 Pheophorbide a oxygenase-related protein; (1 of 3) K13071 - pheophorbide a oxygenase (PAO, ACD1) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCGTTCAAAACCTCCGCCGTTGTTCGGCTGTGTGGTGGACTGGCCTTTGC
Internal bar code:TTTCAGTGGGAGCTAGTATGAG

Confirmation - LEAP-Seq

LEAP-Seq distance:1949
LEAP-Seq percent confirming:87.5
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:8

Suggested primers for confirmation by PCR

Suggested primer 1:AACGAGGAGCACATTCACGT
Suggested primer 2:AGTGTTGTCCAGCGGCATTA