Insertion junction: CLIP2.054262_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.054262
Chromosome:chromosome 11
Location:4440092
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre11.g483351 PHC44 Putative pherophorin-chlamydomonas homolog; (1 of 1) IPR003072//IPR003882//IPR024616 - Orphan nuclear receptor, NOR1 type // Pistil-specific extensin-like protein // Pherophorin CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGTTCATGCCGCAGCACTGCGAGCTGGGTTCGCCTGGAGAGCAGCGGCCG
Internal bar code:CAACTTACGAAAAAGAAGGAGT

Confirmation - LEAP-Seq

LEAP-Seq distance:1057
LEAP-Seq percent confirming:57.1429
LEAP-Seq n confirming:4
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:7

Suggested primers for confirmation by PCR

Suggested primer 1:CACCCTCCTACCCTCCTTCA
Suggested primer 2:AGGAAAAAGGTGGGGCAACA