Insertion junction: CLIP2.054262_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.054262
Chromosome:chromosome 11
Location:4440093
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre11.g483351 PHC44 Putative pherophorin-chlamydomonas homolog; (1 of 1) IPR003072//IPR003882//IPR024616 - Orphan nuclear receptor, NOR1 type // Pistil-specific extensin-like protein // Pherophorin CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGAAAAATTGGAGACCCTCATTGGTGAGGCATGCACAGCTGGGTGTATGG
Internal bar code:CAACTTACGAAAAAGAAGGAGT

Confirmation - LEAP-Seq

LEAP-Seq distance:3018
LEAP-Seq percent confirming:98.5507
LEAP-Seq n confirming:68
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:69

Suggested primers for confirmation by PCR

Suggested primer 1:AGGAAAAAGGTGGGGCAACA
Suggested primer 2:CACCCTCCTACCCTCCTTCA