Insertion junction: CLIP2.054315_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.054315
Chromosome:chromosome 17
Location:2289404
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g802049 (1 of 352) PF00078 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTCAATAAAGAGCCCGAACAGCTCTGTGCTCAGTGGGCACCCTTGCTTGA
Internal bar code:GAACATTTTGGGACGTGGAGTG

Confirmation - LEAP-Seq

LEAP-Seq distance:1379
LEAP-Seq percent confirming:7.69231
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:12
LEAP-Seq n unique pos:13

Suggested primers for confirmation by PCR

Suggested primer 1:GGCTGGCGAGATTCGATGTA
Suggested primer 2:CCCATCTCCCTCTGGGTGTA