Insertion junction: CLIP2.054425_3

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.054425
Chromosome:chromosome 4
Location:1238818
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre04.g215150 SSS1B,SSS1,SSIb (1 of 1) IPR023159 - SO1590-like domain; Soluble starch synthase IB intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCCGTGCTCCGCTCCCATCCGTTTCACCCCACCCGCACCACCTCTGCATT
Internal bar code:AGGTCAGTCTCTCGATCCTTAA

Confirmation - LEAP-Seq

LEAP-Seq distance:2582
LEAP-Seq percent confirming:65.8537
LEAP-Seq n confirming:54
LEAP-Seq n nonconfirming:28
LEAP-Seq n unique pos:82

Suggested primers for confirmation by PCR

Suggested primer 1:GCAAGGCGTATGCTAACAGC
Suggested primer 2:AAGTAGCCCACCTGTTGTCG