Insertion junction: CLIP2.054499_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.054499
Chromosome:chromosome 3
Location:2848576
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g162250 RAD1,CGL35,RAD17 Conserved in the Green Lineage; (1 of 1) K02830 - cell cycle checkpoint protein (HRAD1, RAD17) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGCAATCCGCTACGCAAGGGCCCCCATCCTAGACCCCTTCCCCTTCCCTG
Internal bar code:AATTTGTTGCAGGTTCCGGCGC

Confirmation - LEAP-Seq

LEAP-Seq distance:109
LEAP-Seq percent confirming:28.5714
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:7

Suggested primers for confirmation by PCR

Suggested primer 1:GGGGAGTGTCTGTGTCTGTG
Suggested primer 2:TCTCTGTCTGACAAACGCCC