Insertion junction: CLIP2.054539_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.054539
Chromosome:chromosome 2
Location:5833693
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g117250 (1 of 5) 3.2.1.23 - Beta-galactosidase / Lactase 3'UTR
Cre02.g800244 CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATGCCATCCCGACCATTTAATGACTGGCCATGCATGTGTGGCAAAGGCAG
Internal bar code:ACACACTGTAAGCGGATAAGCT

Confirmation - LEAP-Seq

LEAP-Seq distance:323
LEAP-Seq percent confirming:18.1818
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:9
LEAP-Seq n unique pos:11

Suggested primers for confirmation by PCR

Suggested primer 1:AGAGACCTTCGCAGGGAGAT
Suggested primer 2:CTGTGCGATGTGCTATGTGC