Insertion junction: CLIP2.054560_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.054560
Chromosome:chromosome 1
Location:2607095
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g015500 CGL91 (1 of 18) PTHR10774 - EXTENDED SYNAPTOTAGMIN-RELATED; Conserved in the Green Lineage 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCGGAAGGACCCCCACTGGTTTTTGTCAGCTTCGGGCCGCTTCGTCACGC
Internal bar code:GAAATGCTTGAACGTTTCTCTA

Confirmation - LEAP-Seq

LEAP-Seq distance:1305
LEAP-Seq percent confirming:27.2727
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:8
LEAP-Seq n unique pos:11

Suggested primers for confirmation by PCR

Suggested primer 1:GCAAGCACGCAAAACAAACC
Suggested primer 2:GTGAGGGAGATTGTGTGGGG