Insertion junction: CLIP2.054635_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.054635
Chromosome:chromosome 13
Location:902947
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g567700 HAV,HAV2 Histone H2A variant; (1 of 30) K11251 - histone H2A (H2A) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCCGCTGCCCTGCCTTTCTCTCCCACCACAGGCTACCATTGCCGGCGGTG
Internal bar code:CGTTTCGATCCCGTCTATCCGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1521
LEAP-Seq percent confirming:83.3333
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:6

Suggested primers for confirmation by PCR

Suggested primer 1:CTGGGAAACGGTTTGCACAG
Suggested primer 2:CCAAAATGTCTGGCAAGGGC