Insertion junction: CLIP2.054701_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.054701
Chromosome:chromosome 12
Location:4192041
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g517900 SCA1,SECA1 (1 of 1) K03070 - preprotein translocase subunit SecA (secA); Chloroplast-associated SecA protein intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CACCCCTCCCCCTCACCTCCAGCAGGTAGCAGTACTGCACCATCTTGGCG
Internal bar code:ACTGTCTGCGTAGTTGTGCGCA

Confirmation - LEAP-Seq

LEAP-Seq distance:524
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:2

Suggested primers for confirmation by PCR

Suggested primer 1:ATGAGATGCGGTGTGTGTGT
Suggested primer 2:CGGTACACACGTTCTCCACA