Insertion junction: CLIP2.054756_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.054756
Chromosome:chromosome 10
Location:3861282
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g446100 TRX6,TRXY,TRXY1 Thioredoxin y, chloroplastic; (1 of 1) PTHR10438:SF280 - THIOREDOXIN Y1, CHLOROPLASTIC-RELATED intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTGCCAACCCCCAGTGCTAGCCTGAACTGCAAAGCCGTTCGCCCGTACCC
Internal bar code:AAGAGAGTAAGGATTGAGCATG

Confirmation - LEAP-Seq

LEAP-Seq distance:1081
LEAP-Seq percent confirming:82.3529
LEAP-Seq n confirming:14
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:17

Suggested primers for confirmation by PCR

Suggested primer 1:CACATGCGCTCGTGTACATG
Suggested primer 2:TGGTGGACTTCTACGCAACC