Insertion junction: CLIP2.054776_3

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.054776
Chromosome:chromosome 14
Location:3925575
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre14.g632791 (1 of 1) K10768 - alkylated DNA repair protein alkB homolog 6 (ALKBH6) intron
Cre14.g632799 ZSP2A (1 of 31) IPR016187 - C-type lectin fold; ZSP2A, hydroxyproline-rich glycoprotein with lectin-like repeats 5'UTR_intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GAAGGCGGGACAACCCATGTCAACACACACGCGCCATCGGCCAGGGCTTG
Internal bar code:TTCTTCGCGTATGACGTTTTAC

Confirmation - LEAP-Seq

LEAP-Seq distance:467
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:13
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:13

Suggested primers for confirmation by PCR

Suggested primer 1:ATCTGTCTGTGTGTGCCCAG
Suggested primer 2:CGCCATGACTTCACTCACCT