Insertion junction: CLIP2.054794_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.054794
Chromosome:chromosome 16
Location:4560234
Confidence (%):40
Locus systematic id Locus common name Defline Feature
Cre16.g671250 (1 of 3) K12041 - solute carrier family 9 (sodium/hydrogen exchanger), member 6/7 (SLC9A6_7, NHE6_7) 3'UTR_intron
Cre16.g671300 (1 of 3) K12041 - solute carrier family 9 (sodium/hydrogen exchanger), member 6/7 (SLC9A6_7, NHE6_7) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCACCCACGCACCCACCCACCATCACCCACCTACCATGCCGCTGAGGCCC
Internal bar code:GTTGACAAATTTGTAATTATTG

Confirmation - LEAP-Seq

LEAP-Seq distance:1005
LEAP-Seq percent confirming:41.6667
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:7
LEAP-Seq n unique pos:12

Suggested primers for confirmation by PCR

Suggested primer 1:TGAGGACCCTCTCGCATGTA
Suggested primer 2:CGACCGACCCTGAACTTTGA