Insertion junction: CLIP2.054833_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.054833
Chromosome:chromosome 1
Location:5223580
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g036550 ERV14 (1 of 1) PTHR12290:SF11 - PROTEIN CORNICHON; Cornichon-like protein intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCCGCCTATGTGCCGGTGCCCCGCCTACCTTGGCATGCTCTCGCCCCTCC
Internal bar code:CTTCACATTGCACGCCGGGTCA

Confirmation - LEAP-Seq

LEAP-Seq distance:569
LEAP-Seq percent confirming:22.2222
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:7
LEAP-Seq n unique pos:9

Suggested primers for confirmation by PCR

Suggested primer 1:GTGAAGGAGGAGGCAAACGA
Suggested primer 2:ACCCAATCCATGTCTGGCAG