Insertion junction: CLIP2.054836_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.054836
Chromosome:chromosome 7
Location:4115538
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g342700 (1 of 587) 2.7.11.1 - Non-specific serine/threonine protein kinase / Threonine-specific protein kinase 3'UTR
Cre07.g342750 (1 of 1) K18106 - D-galacturonate reductase (GAAA) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGTAAAGCCTCACCCTACGGTGTACTCTCCGGCGCCAACCATAAGAACAC
Internal bar code:TAAAACCGGTGTTCGATCGCGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1527
LEAP-Seq percent confirming:87.5
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:8

Suggested primers for confirmation by PCR

Suggested primer 1:GGGGGCTTTCGTAAGTGTCA
Suggested primer 2:GCGTGTGTTTGTGTATGCGT