Insertion junction: CLIP2.054841_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.054841
Chromosome:chromosome 1
Location:3956944
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g025950 PPR8 (1 of 1) IPR000209//IPR002885 - Peptidase S8/S53 domain // Pentatricopeptide repeat; PentatricoPeptide Repeat protein 8 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGATAGATCCTGCGGGGTCTCAGCCGACGTGGCTTGGCAGTTGGCACCGG
Internal bar code:CTGTAGGGGATGGGTCTCCGCG

Confirmation - LEAP-Seq

LEAP-Seq distance:185
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:10
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:10

Suggested primers for confirmation by PCR

Suggested primer 1:TGGGTCCCCGATTTGCATAC
Suggested primer 2:TTCAACCTCATGACCAGCCC