Insertion junction: CLIP2.054937_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.054937
Chromosome:chromosome 6
Location:3587793
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g278128 (1 of 1) IPR000953//IPR005818//IPR016197 - Chromo/chromo shadow domain // Linker histone H1/H5, domain H15 // Chromo domain-like intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CAACAAGGGGCTACGGTGGGAGGCGCCAGTGGGGCGGTGGCGAGACACTT
Internal bar code:AATGTCATAATATGCCGGCTGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1757
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:33
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:33

Suggested primers for confirmation by PCR

Suggested primer 1:CCCGGAATGACACCCATGAA
Suggested primer 2:ACGGCTTAGGCTTGTCCTTC