Insertion junction: CLIP2.055132_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.055132
Chromosome:chromosome 11
Location:4459486
Confidence (%):80
Locus systematic id Locus common name Defline Feature
lncRNA_TCONS_00166284
lncRNA_TCONS_00166285
lncRNA_TCONS_00166880
lncRNA_TCONS_00168333
lncRNA_TCONS_00168334

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCTTCTCTTGCAGATACAGATAGATACAGATACACGCTCGACTATGCGAC
Internal bar code:TTCTAAGTAGATTGCAAGTGTT

Confirmation - LEAP-Seq

LEAP-Seq distance:2070
LEAP-Seq percent confirming:96.1538
LEAP-Seq n confirming:25
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:26

Suggested primers for confirmation by PCR

Suggested primer 1:GAGTGCTGGAGCCCTGATTT
Suggested primer 2:GGAGCGTTTTTCAAGCACGT