Insertion junction: CLIP2.055139_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.055139
Chromosome:chromosome 13
Location:757196
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g566650 LCS2 Long-chain acyl-CoA synthetase; (1 of 1) 2.7.8.11//6.2.1.3 - CDP-diacylglycerol--inositol 3-phosphatidyltransferase / Phosphatidylinositol synthase // Long-chain-fatty-acid--CoA ligase / Lignoceroyl-CoA synthase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCCACGCGCCACACGCGCCACAAACGATCGCACCTGCATCGCGACCATCC
Internal bar code:TCTCCCGCGTGGCGCCGGACCT

Confirmation - LEAP-Seq

LEAP-Seq distance:1079
LEAP-Seq percent confirming:96.0
LEAP-Seq n confirming:24
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:25

Suggested primers for confirmation by PCR

Suggested primer 1:GCTGGGGCCAAACTGTCTAT
Suggested primer 2:TGCACGGAGAAGTGACCTTC