Insertion junction: CLIP2.055479_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.055479
Chromosome:chromosome 12
Location:6173781
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g535700 HSP70D (1 of 2) PTHR19375:SF173 - CHAPERONE PROTEIN DNAK; Heat shock protein 70D intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATTTCGGGCGGCCGGCCCAGCGGCATCTAGACACCCAACCACGGGGCACG
Internal bar code:TTAGGTAACCGTTTGGCTGGCT

Confirmation - LEAP-Seq

LEAP-Seq distance:274
LEAP-Seq percent confirming:27.2727
LEAP-Seq n confirming:6
LEAP-Seq n nonconfirming:16
LEAP-Seq n unique pos:22

Suggested primers for confirmation by PCR

Suggested primer 1:CCTGCTCGTTGTCCTTTCCT
Suggested primer 2:CCACATGGACGGCTAACCTT