Insertion junction: CLIP2.055597_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.055597
Chromosome:chromosome 13
Location:1130799
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g569500 (1 of 3) PTHR10696 - GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED; Similar to conserved hypothetical protein in bacteria CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTCACCTGACGCCCGAGCACATCGCCGAGCTTGATGCAGCCGTGGACAAG
Internal bar code:TAGATATCTATTAATACTGGGA

Confirmation - LEAP-Seq

LEAP-Seq distance:3277
LEAP-Seq percent confirming:87.5
LEAP-Seq n confirming:28
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:32

Suggested primers for confirmation by PCR

Suggested primer 1:GGAGCACGAAGAGACAACCA
Suggested primer 2:CGCATGTATGAACGGGCAAG