Insertion junction: CLIP2.055702_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.055702
Chromosome:chromosome 9
Location:5770149
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g410950 NIA1,NIT1 Nitrate reductase; (1 of 1) 1.6.2.2//1.7.1.1 - Cytochrome-b5 reductase // Nitrate reductase (NADH) / Nitrate reductase (NADH(2)) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GAGGCGTGGTTGTGGGTACGTGCGTGCCCAGCAGCTGCACCCCAACCCGT
Internal bar code:GCGCCGACTTTGCGGGACGCCA

Confirmation - LEAP-Seq

LEAP-Seq distance:423
LEAP-Seq percent confirming:37.5
LEAP-Seq n confirming:12
LEAP-Seq n nonconfirming:20
LEAP-Seq n unique pos:32

Suggested primers for confirmation by PCR

Suggested primer 1:TTGCTGGTTTTGATGCCACG
Suggested primer 2:CCCACCCCATCCCACTAAAC