Insertion junction: CLIP2.056023_3

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.056023
Chromosome:chromosome 5
Location:2421007
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre05.g238650 PHC5 (1 of 24) IPR003882//IPR024616 - Pistil-specific extensin-like protein // Pherophorin; Pherophorin-chlamydomonas homolog 5 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCCACGCCGCCGCTTCGCCACATCTTCTGAGACAACGGTGCGTGCGCCTT
Internal bar code:TATGTGATCCTTCGCTTCTGTA

Confirmation - LEAP-Seq

LEAP-Seq distance:1688
LEAP-Seq percent confirming:85.7143
LEAP-Seq n confirming:60
LEAP-Seq n nonconfirming:10
LEAP-Seq n unique pos:70

Suggested primers for confirmation by PCR

Suggested primer 1:GTGGTGGACGAGAAGAAGGG
Suggested primer 2:CAGCCTCCTACCTATGCACG