Insertion junction: CLIP2.056047_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.056047
Chromosome:chromosome 2
Location:7479572
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g392505 (1 of 4) PTHR22849//PTHR22849:SF39 - WDSAM1 PROTEIN // SUBFAMILY NOT NAMED 3'UTR
Cre09.g392542 (1 of 1) K11423 - histone-lysine N-methyltransferase SETD2 (SETD2, SET2) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCTGTGCACTGTCGTCCACAAGGGATGCATGCGGCACACCGCTGGGTGAC
Internal bar code:AGGGTTATTTTGGTACATATGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1361
LEAP-Seq percent confirming:82.1429
LEAP-Seq n confirming:23
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:28

Suggested primers for confirmation by PCR

Suggested primer 1:CTACGAGTAGGCTCTGCAGC
Suggested primer 2:AGTGCACAGTATTGGAGGGC