Insertion junction: CLIP2.056049_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.056049
Chromosome:plastome
Location:70112
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802282 psaA_exon3,ChreCp019,2717000 photosystem I P700 apoprotein A1 transpliced exon 3 of 3; (1 of 1) K02689 - photosystem I P700 chlorophyll a apoprotein A1 (psaA) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCATCTAATAATTTGTTTACTGGTAAAGAAACGTGAATTTGGTGACCAGC
Internal bar code:TACGGATACGCTGAATACCATA

Confirmation - LEAP-Seq

LEAP-Seq distance:155
LEAP-Seq percent confirming:33.3333
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:3

Suggested primers for confirmation by PCR

Suggested primer 1:ATGGCACGAGCAGGTTTACA
Suggested primer 2:TTGCGTACATGTGGTGAGCT