Insertion junction: CLIP2.056057_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.056057
Chromosome:chromosome 1
Location:5512078
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g039150 PIC1,CPLD5,TIC21 Conserved in the plant lineage and diatoms 5; (1 of 2) PTHR33510:SF5 - PROTEIN TIC 20-V, CHLOROPLASTIC 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTCTGTATGTCGCAGTGATCAACTCATGAACCTGCCCCCAGCAAACCAAC
Internal bar code:TCCTTTGGGCAAGGATCTTTAT

Confirmation - LEAP-Seq

LEAP-Seq distance:3149
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:57
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:57

Suggested primers for confirmation by PCR

Suggested primer 1:ATGAGCCTGTACCACTCCCT
Suggested primer 2:GTTGTTTTGAACGTCGGGGG