Insertion junction: CLIP2.056057_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.056057
Chromosome:chromosome 1
Location:5512079
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g039150 PIC1,CPLD5,TIC21 Conserved in the plant lineage and diatoms 5; (1 of 2) PTHR33510:SF5 - PROTEIN TIC 20-V, CHLOROPLASTIC 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTGTGCTTTGATCGCGGTACTTGCGCTTTGAAGTGGAGGCTGTGGAGCAC
Internal bar code:CAGGTGGGGGATTTTTTACGGG

Confirmation - LEAP-Seq

LEAP-Seq distance:363
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:1

Suggested primers for confirmation by PCR

Suggested primer 1:GTTGTTTTGAACGTCGGGGG
Suggested primer 2:ATGAGCCTGTACCACTCCCT