Insertion junction: CLIP2.056104_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.056104
Chromosome:chromosome 4
Location:2679371
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre04.g223250 LCIE,LCIE1 Low-CO2 inducible protein E 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTTGATGATGTCCATACATCCGGTCCGCTCTTCTCTTTCGCTCAATCCTG
Internal bar code:GTTCAAGGGTCTTTGCTAAGTA

Confirmation - LEAP-Seq

LEAP-Seq distance:1975
LEAP-Seq percent confirming:89.4737
LEAP-Seq n confirming:34
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:38

Suggested primers for confirmation by PCR

Suggested primer 1:TAGGGTGACTTGCGAGCTTG
Suggested primer 2:GGCTGCTCAGATCACCAAGT