Insertion junction: CLIP2.056111_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.056111
Chromosome:chromosome 3
Location:7491442
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g205550 (1 of 781) IPR000104 - Antifreeze protein, type I 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGTTTTAAGGGTGCCTGGGGCCAGGGGCCAGAGCGAGGCGCCCGCGCCAC
Internal bar code:ATCGGAATTTCAGTTAAACTAG

Confirmation - LEAP-Seq

LEAP-Seq distance:1293
LEAP-Seq percent confirming:51.6667
LEAP-Seq n confirming:31
LEAP-Seq n nonconfirming:29
LEAP-Seq n unique pos:60

Suggested primers for confirmation by PCR

Suggested primer 1:GTGCGCCTCGTATACGGTAA
Suggested primer 2:CTTGCAAATGCCACCGAACA