Insertion junction: CLIP2.056140_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.056140
Chromosome:chromosome 10
Location:3171176
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g441800 (1 of 4) PF05066 - HB1, ASXL, restriction endonuclease HTH domain (HARE-HTH) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATTTCACTAGCCCTGCACCGCCAATGTGTCTGAATTTGCAGCGCCAGCAC
Internal bar code:CATTATTTAGCCTATCTGATGC

Confirmation - LEAP-Seq

LEAP-Seq distance:5224
LEAP-Seq percent confirming:94.8276
LEAP-Seq n confirming:55
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:58

Suggested primers for confirmation by PCR

Suggested primer 1:TGACAACGCTTGGCCATACT
Suggested primer 2:TCCGGCTCACCAAGTTACAC