Insertion junction: CLIP2.056186_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.056186
Chromosome:chromosome 9
Location:3275392
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g395028 (1 of 2) PF02470 - MlaD protein (MlaD) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCCAAAGTCAAGCCAGTCAGCAAGCATCATATTTCACACGAAGCGGTACC
Internal bar code:CTTTCGAGTCTATATTCACCAG

Confirmation - LEAP-Seq

LEAP-Seq distance:717
LEAP-Seq percent confirming:88.8889
LEAP-Seq n confirming:24
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:27

Suggested primers for confirmation by PCR

Suggested primer 1:GGCGTGGGCACTTCATTTTT
Suggested primer 2:AGCAAGGGAAGGAGGATTGC