Insertion junction: CLIP2.056236_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.056236
Chromosome:chromosome 4
Location:1804490
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre04.g211600 snRK1,CKIN1,SNF1,SNRK1A (1 of 1) PTHR24343//PTHR24343:SF183 - SERINE/THREONINE KINASE // SUBFAMILY NOT NAMED; snRK1 family in Chlamydomonas, subgroup 1 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACCAAAACGGGGGGGGCTCCATGCATGTTGAATAAGACGAGAGGGCGGGG
Internal bar code:ACCAAAATTTCTGTAGGTAGTG

Confirmation - LEAP-Seq

LEAP-Seq distance:366
LEAP-Seq percent confirming:52.1739
LEAP-Seq n confirming:12
LEAP-Seq n nonconfirming:11
LEAP-Seq n unique pos:23

Suggested primers for confirmation by PCR

Suggested primer 1:CCAGAGACGGAGGAGGGTTA
Suggested primer 2:GGATCACTGCCCTTTGACGA