Insertion junction: CLIP2.056270_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.056270
Chromosome:chromosome 5
Location:2778231
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre05.g240850 THIC1,THIC,THI8 (1 of 1) 4.1.99.17 - Phosphomethylpyrimidine synthase; Hydroxymethylpyrimidine phosphate synthase 3'UTR
Cre05.g240900 (1 of 1) IPR000001//IPR024079 - Kringle // Metallopeptidase, catalytic domain 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CAACTTGTCGTCAACGCCACTGCTGTGGTCCGGCTGCACCGCTGTTTCGC
Internal bar code:CCGGGCACATACGAGGTCAATT

Confirmation - LEAP-Seq

LEAP-Seq distance:511
LEAP-Seq percent confirming:60.0
LEAP-Seq n confirming:6
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:10

Suggested primers for confirmation by PCR

Suggested primer 1:CATCAAACGCAAGCACCACA
Suggested primer 2:TCTGGGGCAATGGGGATAGA