Insertion junction: CLIP2.056286_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.056286
Chromosome:chromosome 16
Location:6483302
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g674850 (1 of 1) PTHR14625//PTHR14625:SF3 - MICROCEPHALIN // MICROCEPHALIN 3'UTR
Cre16.g674900 (1 of 55) PTHR23257//PTHR23257:SF394 - SERINE-THREONINE PROTEIN KINASE // SUBFAMILY NOT NAMED CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCCATCACTGCGGCCTTGATGGCTTCCAGGATGTTGCTGCCCGTGCCCTT
Internal bar code:GGTGGCCCCGATGAAGTAGTAG

Confirmation - LEAP-Seq

LEAP-Seq distance:552
LEAP-Seq percent confirming:86.9565
LEAP-Seq n confirming:20
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:23

Suggested primers for confirmation by PCR

Suggested primer 1:CATCAGTGGGAGCATGGGTT
Suggested primer 2:ATACGCGACATCTGAGCAGG