Insertion junction: CLIP2.056341_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.056341
Chromosome:plastome
Location:4975
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802264 petD,ChreCp002,2717021 cytochrome b6/f complex subunit 4; (1 of 1) K02637 - cytochrome b6-f complex subunit 4 (petD) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTGTTGTGACCCATACCTTTAGCTAATTTTGCTTTTAAAACTGGATCGCT
Internal bar code:GTTCCAGGTAATTATTATTCTA

Confirmation - LEAP-Seq

LEAP-Seq distance:115
LEAP-Seq percent confirming:38.4615
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:8
LEAP-Seq n unique pos:13

Suggested primers for confirmation by PCR

Suggested primer 1:CCCCTTCGGGCAAGTAAACT
Suggested primer 2:ACGAGTGGCTGAAAGTGACC