Insertion junction: CLIP2.056395_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.056395
Chromosome:chromosome 10
Location:2926279
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g439900 HSP70G ER-located HSP110/SSE-like protein; (1 of 1) K09486 - hypoxia up-regulated 1 (HYOU1) 3'UTR
Cre10.g439950 (1 of 587) 2.7.11.1 - Non-specific serine/threonine protein kinase / Threonine-specific protein kinase 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTCGTGCGTCGTGGCGAGGAGTGGCAGACCTGGATGGAACCGATGTGCAC
Internal bar code:ATTTTGTCTAGGTCGTGATTTT

Confirmation - LEAP-Seq

LEAP-Seq distance:1792
LEAP-Seq percent confirming:59.5745
LEAP-Seq n confirming:28
LEAP-Seq n nonconfirming:19
LEAP-Seq n unique pos:47

Suggested primers for confirmation by PCR

Suggested primer 1:TACACGCGTCATGTTGACCA
Suggested primer 2:TGTCAGCTTGGCTACACCTG