Insertion junction: CLIP2.056396_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.056396
Chromosome:chromosome 10
Location:3583585
Confidence (%):40
Locus systematic id Locus common name Defline Feature
Cre10.g801146 (1 of 30) PF00078//PF03372 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Endonuclease/Exonuclease/phosphatase family (Exo_endo_phos) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGCTAACCCGCCACTGCGGCGGCGCCGCTGGCGGCTGAGTGGCTGGCTGC
Internal bar code:TAGTAGATAGCTAACGTTAGGC

Confirmation - LEAP-Seq

LEAP-Seq distance:356
LEAP-Seq percent confirming:17.6471
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:14
LEAP-Seq n unique pos:17

Suggested primers for confirmation by PCR

Suggested primer 1:TTCAGCTTCCTCAACCCGTC
Suggested primer 2:TGTTCCACACCTTTTCCCCC