Insertion junction: CLIP2.056487_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.056487
Chromosome:chromosome 3
Location:5489166
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g184600 RWP7 (1 of 1) IPR003035//IPR009057 - RWP-RK domain // Homeodomain-like; RWP-RK transcription factor 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCTCGTGGCACATGCCGCGCTTTCATGTGCCATACAAAATGCACCCCTCG
Internal bar code:GGGAATAATCCGGTGGTTGCGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1305
LEAP-Seq percent confirming:42.1875
LEAP-Seq n confirming:27
LEAP-Seq n nonconfirming:37
LEAP-Seq n unique pos:64

Suggested primers for confirmation by PCR

Suggested primer 1:CAAGCCCCAAAGTTGCAGTC
Suggested primer 2:CTGGCCCGAATACGCATTTG