Insertion junction: CLIP2.056496_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.056496
Chromosome:chromosome 13
Location:622090
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g565750 EFG4 (1 of 1) K14416 - elongation factor 1 alpha-like protein (HBS1); Translation elongation factor Tu family protein 5'UTR
Cre13.g565800 UPTG1,UPT1,RGP1,UTPG1,EZY11 UDP-Arabinosyl mutase. .; (1 of 1) 5.4.99.30 - UDP-arabinopyranose mutase 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TATTTGTTGCACGCCGGGTGCGTCCGAACAATTCTACTGCTGGCACCAAA
Internal bar code:GCAGTAGTGTTAGTCGACAGGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1764
LEAP-Seq percent confirming:96.0
LEAP-Seq n confirming:24
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:25

Suggested primers for confirmation by PCR

Suggested primer 1:GGAGGAGTGCTACATCGAGC
Suggested primer 2:TGTGTGAAGACGTTGGGAGG