Insertion junction: CLIP2.056531_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.056531
Chromosome:plastome
Location:29294
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802278 2717059,rpl5,ChreCp016 50S ribosomal protein L5; (1 of 2) PF00673 - ribosomal L5P family C-terminus (Ribosomal_L5_C) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TAATTGTTCTTCTAAACCTAAACTATAATTACCTTTTTTATCAAAACTTT
Internal bar code:GTACGCTGAGCGCGTGCTTCGA

Confirmation - LEAP-Seq

LEAP-Seq distance:367
LEAP-Seq percent confirming:78.2609
LEAP-Seq n confirming:18
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:23

Suggested primers for confirmation by PCR

Suggested primer 1:TCGGGGGATATGCTTTGCAA
Suggested primer 2:AGGCAGTGGACTTACCCAGA