Insertion junction: CLIP2.056565_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.056565
Chromosome:chromosome 6
Location:5884287
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g289600 (1 of 781) IPR000104 - Antifreeze protein, type I 3'UTR
Cre06.g289650 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTGCTCACGCGTGCTTACGCCATACTCAACTCGCACAATCCTTGTACATA
Internal bar code:GGGTCCGGCTGTTCCTGTGTTG

Confirmation - LEAP-Seq

LEAP-Seq distance:1641
LEAP-Seq percent confirming:59.2593
LEAP-Seq n confirming:32
LEAP-Seq n nonconfirming:22
LEAP-Seq n unique pos:54

Suggested primers for confirmation by PCR

Suggested primer 1:CGAACATTTGGGTGCATGGG
Suggested primer 2:CTGAGCCGTCATACGAGCTT