Insertion junction: CLIP2.056596_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.056596
Chromosome:plastome
Location:196963
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802335 rpoC1,ChreCp069,2717049 (1 of 2) K03046 - DNA-directed RNA polymerase subunit beta' (rpoC); RNA polymerase beta' chain CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATAAAGCCTGTCATATTCGTGATGTTTTAATTCGTCGCACAAAATTAACC
Internal bar code:TGTAAGGGCAAATCGCATCGGA

Confirmation - LEAP-Seq

LEAP-Seq distance:87
LEAP-Seq percent confirming:25.0
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:4

Suggested primers for confirmation by PCR

Suggested primer 1:ATTGGCGGAATCGACCTTGT
Suggested primer 2:CTCCAAAATCGGGCGTCAAC