Insertion junction: CLIP2.056651_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.056651
Chromosome:plastome
Location:69659
Confidence (%):40
Locus systematic id Locus common name Defline Feature
CreCp.g802282 psaA_exon3,ChreCp019,2717000 photosystem I P700 apoprotein A1 transpliced exon 3 of 3; (1 of 1) K02689 - photosystem I P700 chlorophyll a apoprotein A1 (psaA) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCTAAATAAGGGTATGGAGGCATTGCGTACATGTGGTGAGCTACAATAAT
Internal bar code:ATCAGGTATCTACCATTTGTGG

Confirmation - LEAP-Seq

LEAP-Seq distance:178
LEAP-Seq percent confirming:40.0
LEAP-Seq n confirming:6
LEAP-Seq n nonconfirming:9
LEAP-Seq n unique pos:15

Suggested primers for confirmation by PCR

Suggested primer 1:GCTGGTTGGTTCCACTACCA
Suggested primer 2:CAGGACCGTCACAAGGGAAA