Insertion junction: CLIP2.056687_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.056687
Chromosome:plastome
Location:141216
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802321 psbA,2716987,ChreCp057 (1 of 2) K02703 - photosystem II P680 reaction center D1 protein (psbA); photosystem II protein D1 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGTAGGGGCAAAATTCTACCTAAAGGCATACCGTCAGAGAATGAACCTT
Internal bar code:TGTGAGGGGCACAGGAATAATG

Confirmation - LEAP-Seq

LEAP-Seq distance:48
LEAP-Seq percent confirming:3.22581
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:30
LEAP-Seq n unique pos:31

Suggested primers for confirmation by PCR

Suggested primer 1:CGGATCGCCATCAAAACCTG
Suggested primer 2:CCCCTTCGGGCAAGTAAACT