Insertion junction: CLIP2.056693_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.056693
Chromosome:chromosome 3
Location:3907344
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g170800 (1 of 1) PTHR12231//PTHR12231:SF138 - CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN // SUBFAMILY NOT NAMED 3'UTR
Cre03.g170850 MMP19 Matrix metalloproteinase; (1 of 40) 3.4.24.38 - Gametolysin / Lysin 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AAGCCATCCATCTGGGTTGAGAGCATATAAAACACTACTAGTACTAGGAC
Internal bar code:ATCGTCCGACAGCAATTTTCAG

Confirmation - LEAP-Seq

LEAP-Seq distance:690
LEAP-Seq percent confirming:92.8571
LEAP-Seq n confirming:13
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:14

Suggested primers for confirmation by PCR

Suggested primer 1:TGAGCTGGATGAGTACCGGA
Suggested primer 2:GGCCTGGTTGATGACATGGA