Insertion junction: CLIP2.056720_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.056720
Chromosome:chromosome 6
Location:5665601
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g287850 (1 of 781) IPR000104 - Antifreeze protein, type I 3'UTR
Cre06.g287900 (1 of 1) PF10067 - Predicted membrane protein (DUF2306) (DUF2306) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTGGGGTGGTGTCGGTGGCCATAGCGCTGAGCTGGCCAGCTGGGCGTGAG
Internal bar code:AAATTTGGCACATTTAAGTCAC

Confirmation - LEAP-Seq

LEAP-Seq distance:1157
LEAP-Seq percent confirming:64.7059
LEAP-Seq n confirming:11
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:17

Suggested primers for confirmation by PCR

Suggested primer 1:CAGGACGTTCGGTGACAGAA
Suggested primer 2:CGACGTGTTTGGCAAGATCG